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Application to the Creanor & Mitchison experiment

In this section we will show that information on the distibution of cells ob tained at one point in the cell cycle can be generally transferred to othere places in the cell cycle.

Data from Creanor & Mitchison (1993) on protein synthesis in fission yeast cells clearly indicate that the distribution of cell cycle times cells is bounded on both sides and bell shaped (fig. 5), and are best represented by the tex2html_wrap_inline932 -distribution.

We had a problem applying our transformation methods to most of their experiments for the number of data points were to low in order to reliably estimate the (higher order) derivatives with respect time necessary for our method. Only the experiments given in figs. 9 & 10 (in Creanor & Mitchison, 1993) had a reasonable number of data points, and we applied the methods on those experiments only (fig. gif). We observe that each method gives rise to a considerable negative part of underlying individual output function. The reason for this negative part is that the distribution function for cell cycle times is least as broad as the peak in enzyme concentration. If the width of the peak in enzyme concentration is smaller then the width of the distribution of cell cycle times necessarily the underlying individual output function must have negative values. Since concentrations can not be negative the results we obtain are flaws, and indicate that the assumption made, that the distribution taken from events at the end of the cycle can be caried over to the distribution of cells at the moment of the start of CDC13, is is falsified. The distribution of cells at the moment of starting CDC13 build up has to have a smaller width to allow for positive enzyme concentrations.

An exact trace of CDC13 concentration could never have been generated from this data for we still have to decide which transformation method is the proper one. But, knowing that the information on the distribution of cell cycle times does not hold at the moment of starting CDC13 build up, we clearly cannot use any method presented here to

   figure233
Figure 5: Distribution functions for wildtype (black line in A and B) and cdc13 mutant (gray line in A) cells of fission yeast (From Creanor & Mitchison (1993). A:The dashed lines are the results of fitting the tex2html_wrap_inline932 -distribution to the experimental data. B:For the wildtype cells additional distributions were fitted: The uniform distribution (solid gray line, and the exponenetial distribution (dashed gray line).


next up previous
Next: Discussion Up: Estimating the behavior of Previous: Application to the Stuart

John Val
Mon Oct 14 15:36:06 EDT 1996